From: Epigenetic silencing of TGFBI confers resistance to trastuzumab in human breast cancer
TargetID | Chr | Position | Gene name | Gene region | SK | SKTR | SKTR vs SK |
---|---|---|---|---|---|---|---|
cg08757148 | 1 | 24513722 | IL28RA;IL28RA;IL28RA | 1stExon;1stExon;1stExon | 0.11 | 0.67 | 0.56 |
cg03470088 | 1 | 24513939 | IL28RA;IL28RA;IL28RA | TSS200;TSS200;TSS200 | 0.05 | 0.79 | 0.75 |
cg26558485 | 1 | 47489282 | CYP4X1;CYP4X1 | 1stExon;5′UTR | 0.14 | 0.69 | 0.54 |
cg06816106 | 2 | 29033352 | SPDYA;SPDYA | TSS1500;TSS1500 | 0.18 | 0.64 | 0.46 |
cg14798656 | 2 | 97760745 | FAHD2B | TSS200 | 0.17 | 0.62 | 0.45 |
cg25999267 | 3 | 39424992 | SLC25A38;SLC25A38 | 1stExon;5′UTR | 0.19 | 0.75 | 0.56 |
cg17264618 | 3 | 40429014 | ENTPD3 | 5′UTR | 0.14 | 0.61 | 0.46 |
cg09363539 | 3 | 124931746 | SLC12A8 | TSS200 | 0.01 | 0.82 | 0.81 |
cg15860013 | 3 | 138327718 | FAIM;FAIM;FAIM;FAIM;FAIM;FAIM;FAIM | 5′UTR;TSS200;1stExon;5′UTR;1stExon;5′UTR;1stExon | 0.18 | 0.68 | 0.50 |
cg20841906 | 3 | 160822911 | B3GALNT1;B3GALNT1;B3GALNT1;B3GALNT1;B3GALNT1 | 5′UTR;5′UTR;5′UTR;5′UTR;TSS1500 | 0.06 | 0.70 | 0.64 |
cg20986370 | 4 | 57976171 | IGFBP7 | 1stExon | 0.19 | 0.69 | 0.49 |
cg19031658 | 4 | 74964856 | CXCL2;CXCL2 | 1stExon;5′UTR | 0.05 | 0.89 | 0.85 |
cg22847221 | 4 | 74964920 | CXCL2;CXCL2 | 1stExon;5′UTR | 0.13 | 0.61 | 0.48 |
cg00630212 | 4 | 74965135 | CXCL2 | TSS200 | 0.16 | 0.65 | 0.49 |
cg18804985 | 4 | 74965226 | CXCL2 | TSS1500 | 0.18 | 0.96 | 0.78 |
cg01429321 | 5 | 121413797 | LOX;LOX | 5′UTR;1stExon | 0.10 | 0.62 | 0.52 |
cg21034676 | 5 | 135364552 | TGFBI | TSS200 | 0.11 | 0.61 | 0.51 |
cg14120129 | 5 | 135364575 | TGFBI | TSS200 | 0.06 | 0.61 | 0.55 |
cg09873933 | 5 | 135364580 | TGFBI | TSS200 | 0.09 | 0.63 | 0.54 |
cg07151644 | 6 | 31649089 | LY6G5C | TSS1500 | 0.16 | 0.60 | 0.44 |
cg07753583 | 7 | 150020206 | LRRC61;ACTR3C;LRRC61 | TSS200;5′UTR;TSS200 | 0.17 | 0.86 | 0.69 |
cg10348193 | 7 | 150020240 | LRRC61;ACTR3C;LRRC61 | TSS200;5′UTR;TSS200 | 0.15 | 0.97 | 0.82 |
cg11026333 | 7 | 150020269 | LRRC61;ACTR3C;LRRC61 | TSS200;5′UTR;TSS200 | 0.06 | 0.98 | 0.92 |
cg01270001 | 7 | 150020401 | LRRC61;ACTR3C;LRRC61;LRRC61;LRRC61 | 1stExon;5′UTR;5′UTR;5′UTR;1stExon | 0.13 | 0.94 | 0.81 |
cg22893248 | 7 | 150020751 | ACTR3C;ACTR3C;LRRC61;LRRC61 | 1stExon;5′UTR;5′UTR;5′UTR | 0.19 | 0.73 | 0.54 |
cg09327770 | 12 | 46663270 | SLC38A1;SLC38A1 | TSS200;TSS200 | 0.02 | 0.83 | 0.81 |
cg20463033 | 12 | 46663274 | SLC38A1;SLC38A1 | TSS200;TSS200 | 0.01 | 0.77 | 0.76 |
cg24795297 | 12 | 46663281 | SLC38A1;SLC38A1 | TSS200;TSS200 | 0.07 | 0.77 | 0.71 |
cg03859162 | 13 | 99404887 | SLC15A1;SLC15A1 | 1stExon;5′UTR | 0.12 | 0.66 | 0.55 |
cg03485262 | 14 | 92980031 | RIN3 | TSS200 | 0.04 | 0.72 | 0.68 |
cg08114373 | 14 | 92980204 | RIN3;RIN3 | 5′UTR;1stExon | 0.17 | 0.61 | 0.44 |
cg18614734 | 15 | 96876248 | NR2F2;NR2F2;NR2F2;MIR1469;NR2F2 | Body;Body;5′UTR;TSS1500;TSS1500 | 0.18 | 0.65 | 0.47 |
cg01549404 | 16 | 55358636 | IRX6;IRX6 | 5′UTR;1stExon | 0.11 | 0.61 | 0.50 |
cg01568244 | 16 | 67218584 | KIAA0895L;EXOC3L | TSS1500;Body | 0.14 | 0.82 | 0.69 |
cg01666600 | 17 | 21279561 | KCNJ12 | TSS200 | 0.05 | 0.70 | 0.65 |
cg03928539 | 17 | 21279613 | KCNJ12 | TSS200 | 0.08 | 0.62 | 0.54 |
cg01637175 | 17 | 21281507 | KCNJ12 | 5′UTR | 0.08 | 0.78 | 0.70 |
cg11804833 | 17 | 40575289 | PTRF;PTRF | 1stExon;5′UTR | 0.08 | 0.62 | 0.54 |
cg06093379 | 17 | 44896080 | WNT3;WNT3 | 5′UTR;1stExon | 0.01 | 0.83 | 0.82 |
cg24441185 | 18 | 9708096 | RAB31 | TSS200 | 0.06 | 0.92 | 0.86 |
cg17289202 | 18 | 56530789 | ZNF532 | 5′UTR | 0.13 | 0.80 | 0.67 |
cg22932336 | 19 | 4535070 | PLIN5 | 5′UTR | 0.10 | 0.88 | 0.78 |
cg04532834 | 19 | 4535188 | PLIN5;PLIN5 | 1stExon;5′UTR | 0.17 | 0.64 | 0.46 |
cg02505409 | 19 | 8429160 | ANGPTL4;ANGPTL4;ANGPTL4;ANGPTL4 | 5′UTR;1stExon;5′UTR;1stExon | 0.16 | 0.79 | 0.63 |
cg06837791 | 19 | 8429491 | ANGPTL4;ANGPTL4 | 1stExon;1stExon | 0.17 | 0.61 | 0.44 |
cg12831261 | 21 | 45078437 | RRP1B;HSF2BP | TSS1500;5′UTR | 0.01 | 0.93 | 0.92 |