Fig. 2
From: RET signaling in breast cancer therapeutic resistance and metastasis
RET gene expression in breast cancer cell lines measured via RNASeq. Cell lines are ranked by RET Expression, and classified by cell line PAM50 subtype. Data were generated using RNA-seq fastqs using salmon (PMID: 28263959, v0.12.0, 31-kmer quasi-mapping, gcBias, seqBias, validateMappings). Fastqs from either (1) CCLE (PMID: 22460905), (2) Marcotte et al. Cell 2016 (PMID: 26771497), (3) courtesy of Dr. Joe Gray, OHSU. Mapping reference: Homo_sapiens.GRCh38.82. Expression represented as log2-transformed TMM-normalized CPMs. PAM50s called with genefu (PMID: 26607490). Full data are available to the public at LeeOesterreich.org