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Table 2 Primer information

From: Breast cancer oestrogen independence mediated by BCAR1 or BCAR3 genes is transmitted through mechanisms distinct from the oestrogen receptor signalling pathway or the epidermal growth factor receptor signalling pathway

Gene

 

Sequence 5'→3'

HPRT1

F

TATTGTAATGACCAGTCAACAG

 

R

GGTCCTTTTCACCAGCAAG

HMBS (= PBGD)

F

CATGTCTGGTAACGGCAATG

 

R

GTACGAGGCTTTCAATGTTG

IGFBP5

F

GGGTTTGCCTCAACGAAAAG

 

R

TTTCTGCGGTCCTTCTTCAC

ESR1 (ERα)

F

GAGCACCCAGGGAAGCTAC

 

R

CATCAGGTGGATCAAAGTGTC

CSTD (cathepsin D)

F

CACGGGCTCCTCCAACCT

 

R

GGACTTGTCGCTGTTGTACTTGTG

TFF1 (PS2)

F

ATGGCCACCATGGAGAAC

 

R

TTCACACTCCTCTTCTGG

MYC

F

GAGCCCCTGGTGCTCCAT

 

R

CGATTTCTTCCTCATCTTCTTGTTC

ESR2 (ERβ)

F

TCAGCCTGTTCGACCAAGTG

 

R

GGCCTTGACACAGAGATATTC

PGR

F

CAAGTTAGCCAAGAAGAGTTC

 

R

ACTTCGTAGCCCTTCCAAAG

ERBB2 (HER2/Neu)

F

GTCTACAAGGGCATCTGGAT

 

R

GTGGATGTCAGGCAGATGC

BCAR3

F

GCGGTGGAACTGAAGGATTC

 

R

TGGCAGTTTGGGTGTACTGG

BCAR1

F

CTGCCCAGGATATTTACCAG

 

R

CGTCATACACCTCCAGCAAC

EGFR

F

CGGGACATAGTCAGCAGTG

 

R

GCTGGGCACAGATGATTTTG

Gene

Product code

CDKN1A

HS00355782_m1

PGK1

Hs99999906_m1

IL1R1

Hs00168392_m1

CSTA

Hs00193257_m1

TFF3

Hs00173625_m1

FMOD

Hs00157619_m1

PDZK1

Hs00420042_m1

APOD

Hs00155794_m1

MGP

Hs00179899_m1

PSAT1

Hs00253548_m1

  1. F, forward; R, reverse. The gene names are defined in Additional file 3.